FSL

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Installation

On Ubuntu 12.04 it's best to install FSL via apt. Using command

wget -O- http://neuro.debian.net/lists/precise.us-nh.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list

sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9

sudo apt-get update

Then run

sudo apt-get install fsl

Once installed, put the line

source /etc/fsl/5.0/fsl.sh

In the ~/.bashrc script.